Basic Information
Locus ID:
gene-LOC107027193
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 69741331 | 69746650 | - | gene-LOC107027193 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 43,679.81 Da | 49.33 | 84.29 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 327 | 370 | 9.60945E-17 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 31 | 100 | 6.8E-18 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 327 | 370 | 5.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 319 | 373 | 2.52E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 374 | 3.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 328 | 369 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 328 | 370 | 12.902362 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015083859.1 | putative RING-H2 finger protein ATL21A [Solanum pennellii] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology