Basic Information
Locus ID:
gene-LOC107026902
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Zn-finger in Ran binding protein and others
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 5054257 | 5057005 | - | gene-LOC107026902 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 55,265.08 Da | 51.78 | 70.08 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 307 | 330 | 2.1E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 264 | 288 | 6.6E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 342 | 364 | 3.1E-5 | IPR001876 |
| SUPERFAMILY | SSF48695 | Multiheme cytochromes | 245 | 350 | 8.37E-6 | IPR036280 |
| Gene3D | G3DSA:4.10.1060.10 | - | 257 | 291 | 4.0E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 337 | 370 | 2.9E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 298 | 336 | 1.7E-12 | - |
| SMART | SM00547 | zf_4 | 309 | 333 | 7.1E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 342 | 366 | 2.2E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 265 | 289 | 9.5E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 340 | 369 | 9.709803 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 307 | 336 | 9.687219 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 263 | 292 | 9.450083 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 344 | 363 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 267 | 286 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 465 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_027774580.1 | zinc finger protein VAR3, chloroplastic-like isoform X1 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2AMG7 | Uncharacterized protein OS=Solanum chilense OX=4083 GN=EJD97_001038 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology