Basic Information
Locus ID:
gene-LOC107026812
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the WD repeat SEC13 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 69605540 | 69610859 | + | gene-LOC107026812 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 35,899.98 Da | 44.33 | 85.45 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 273 | 307 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 12 | 312 | 2.24E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 324 | 2.7E-50 | IPR015943 |
| SMART | SM00320 | WD40_4 | 45 | 86 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 212 | 257 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 96 | 137 | 8.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 308 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 37 | 0.38 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 276 | 308 | 9.836508 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 276 | 308 | 11.778342 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64350.1 | Transducin/WD40 repeat-like superfamily protein. seh1-like protein | 0 |
| RefSeq | XP_015083387.1 | protein SEH1 [Solanum pennellii] | 0 |
| Q93VR9 | Protein SEH1 OS=Arabidopsis thaliana OX=3702 GN=SEH1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37035 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1770 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003838 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g099170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24009, Sbi_jg7837 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12195 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010615 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52175, Sgl57449 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005393, gene:ENSEOMG00000021555 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0006060, CQ.Regalona.r1.5BG0006410 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30134630, pistato.v30136370 |
| Apiaceae | Apium graveolens | 1 | Ag8G00592 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695903 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.830.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G17214 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G64350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10023589m.g.v1.0, Thhalv10023957m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g00410.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g022780.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0171 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0201 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g02020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0371s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11213 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1517 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005356 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08249 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2367, BH02.2472, CH02.2650 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0024860, gene-QOZ80_1BG0075490 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0273010.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053907 |
| Poaceae | Oryza coarctata | 1 | Oco02G015100 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g43250.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G198000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603381, Pt_Chr0603423 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G008170, Chr03G011290, Chr05G018630, Chr08G011470 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G383000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG033540, gene_TRIDC3BG038060 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G223900.1, TraesCS3B02G253300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb159590_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29220 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8242 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.414, evm.TU.LG17.409 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g08630 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.95 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22342 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4380 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20388 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000022l.436, evm.TU.utg000022l.441 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014169, Maker00014289 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3578 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6751 |
| Salicaceae | Populus euphratica | 1 | populus_peu34519 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634808 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026812 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10501 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0088 |
| Zosteraceae | Zostera marina | 1 | Zosma01g09210.v3.1 |