Basic Information
Locus ID:
gene-LOC107026790
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
PAS domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 2643212 | 2657172 | + | gene-LOC107026790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 80,469.35 Da | 43.75 | 71.39 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 456 | 701 | 6.53915E-125 | - |
| CDD | cd00130 | PAS | 93 | 182 | 1.54638E-10 | IPR000014 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 451 | 700 | 5.2E-66 | IPR001245 |
| Pfam | PF00989 | PAS fold | 74 | 179 | 7.3E-11 | IPR013767 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 431 | 700 | 1.62E-78 | IPR011009 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 74 | 182 | 1.55E-15 | IPR035965 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 444 | 527 | 2.8E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 529 | 710 | 4.2E-58 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 70 | 192 | 9.8E-20 | - |
| SMART | SM00220 | serkin_6 | 450 | 706 | 4.8E-49 | IPR000719 |
| SMART | SM00091 | pas_2 | 72 | 139 | 2.4E-8 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 74 | 182 | 2.8E-12 | IPR000014 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 93 | 141 | 12.034856 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 450 | 707 | 41.502384 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 456 | 477 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 569 | 581 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 629 | 651 | 2.2E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 563 | 581 | 2.2E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 673 | 695 | 2.2E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 610 | 620 | 2.2E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 524 | 537 | 2.2E-12 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 263 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23050.1 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_015083358.1 | putative proline-rich receptor-like protein kinase PERK11 isoform X1 [Solanum pennellii] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology