Basic Information
Locus ID:
gene-LOC107026771
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 3333047 | 3339922 | - | gene-LOC107026771 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 27,974.50 Da | 49.92 | 100.43 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 90 | 136 | 2.06778E-12 | - |
| Pfam | PF12906 | RING-variant domain | 90 | 135 | 1.7E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 85 | 138 | 1.87E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 138 | 1.5E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 89 | 136 | 1.5E-14 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 82 | 142 | 18.153439 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45530.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015083337.1 | uncharacterized protein LOC107026771 isoform X1 [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7445 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30132910 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G008450, COCNU_10G006470 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703518 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.143.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G45530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006206m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g05480.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g071830.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0685 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07640 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g10730, gene.Thate01g25210, gene.Thate02g03820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11636 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1640 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041672 |
| Poaceae | Echinochloa crus-galli | 1 | BH01.2051 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0128180, gene-QOZ80_2BG0183610 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0044000.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011584 |
| Poaceae | Oryza coarctata | 2 | Oco19G006290, Oco20G006250 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G200600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502606 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G012630, Chr09G011460, Chr13G013750, Chr15G015870 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G289900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG024080, gene_TRIDC1BG029070 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G158400.2, TraesCS1B02G174400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb045560_P002, Zm00001eb221560_P004 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19170, nbis-gene-21128 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13409, Zma_g16217 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17270 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.11 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18401, nbisL1-mrna-22246 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4693 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8708 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.396 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018471 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10515 |
| Salicaceae | Populus euphratica | 2 | populus_peu00194, populus_peu17263 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609975 |
| Solanaceae | Solanum chilense | 1 | SOLCI001178200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026771 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26160.v3.1 |