Basic Information
Locus ID:
gene-LOC107026410
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 1418809 | 1425091 | - | gene-LOC107026410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.92 | 56,153.80 Da | 44.68 | 85.06 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 27 | 89 | 5.9E-8 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 96 | 217 | 2.4E-15 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 231 | 284 | 6.2E-8 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 329 | 386 | 1.9E-6 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 29 | 284 | 8.63E-50 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 20 | 153 | 7.2E-32 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 154 | 293 | 2.6E-25 | IPR036770 |
| SMART | SM00248 | ANK_2a | 58 | 87 | 4.0E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 231 | 260 | 5.0E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 188 | 217 | 2.9E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 91 | 120 | 0.0033 | IPR002110 |
| SMART | SM00248 | ANK_2a | 125 | 155 | 0.13 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 231 | 263 | 12.822969 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 188 | 220 | 12.28877 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 58 | 90 | 13.41059 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 188 | 215 | 11.82427 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 58 | 89 | 12.301834 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 91 | 122 | 8.932349 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 91 | 123 | 10.01842 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 330 | 380 | 9.376395 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 125 | 146 | 9.807884 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 125 | 146 | 9.83145 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 231 | 262 | 11.850801 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 345 | 354 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 189 | 204 | 7.2E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 247 | 261 | 7.2E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_015082852.1 | probable E3 ubiquitin-protein ligase XBOS32 isoform X1 [Solanum pennellii] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology