Basic Information
Locus ID:
gene-LOC107026246
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 62471553 | 62475755 | - | gene-LOC107026246 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 26,786.98 Da | 41.58 | 95.77 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 18 | 98 | 2.49838E-51 | - |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 109 | 191 | 4.2E-25 | IPR001351 |
| Pfam | PF07650 | KH domain | 23 | 96 | 1.2E-12 | IPR004044 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 96 | 194 | 2.88E-28 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 13 | 102 | 1.53E-25 | IPR009019 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 94 | 3.8E-47 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 96 | 222 | 3.4E-67 | IPR036419 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 11 | 213 | 1.6E-71 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 24 | 95 | 11.157513 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 150 | 186 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_004243723.1 | 40S ribosomal protein S3-2 [Solanum lycopersicum] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology