Basic Information
Locus ID:
gene-LOC107026193
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 3019874 | 3027732 | + | gene-LOC107026193 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 124,873.78 Da | 35.26 | 76.09 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 923 | 957 | 9.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 464 | 498 | 9.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 843 | 1102 | 3.66E-33 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 358 | 673 | 9.77E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 524 | 700 | 1.7E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 808 | 1098 | 7.3E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 324 | 523 | 1.6E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 918 | 957 | 3.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 501 | 542 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1009 | 1050 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 875 | 915 | 5.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 390 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 591 | 631 | 210.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 2.0E-4 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.5E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 411 | 451 | 5.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 457 | 498 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 547 | 588 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 831 | 872 | 330.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.901196 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 925 | 957 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 925 | 966 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 464 | 507 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.29337 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 485 | 499 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1118 | 1135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1113 | 1135 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_015082558.1 | topless-related protein 4-like isoform X1 [Solanum pennellii] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology