Basic Information
Locus ID:
gene-LOC107026039
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
ABC transporter C family member 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 78309499 | 78315269 | - | gene-LOC107026039 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 167,366.98 Da | 33.51 | 103.04 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 936 | 1230 | 2.65511E-94 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1253 | 1473 | 1.42631E-122 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 316 | 603 | 2.41503E-101 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 629 | 828 | 1.01539E-90 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 315 | 582 | 1.2E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1273 | 1420 | 2.7E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 953 | 1182 | 8.5E-33 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 647 | 781 | 1.0E-19 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 936 | 1237 | 7.46E-54 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 306 | 614 | 3.01E-33 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1247 | 1487 | 4.28E-66 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 627 | 851 | 1.07E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 612 | 874 | 4.7E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 293 | 611 | 1.2E-47 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 901 | 1236 | 9.6E-62 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1238 | 1491 | 6.8E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1281 | 1466 | 1.3E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 656 | 829 | 1.6E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 315 | 595 | 32.200211 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1255 | 1489 | 17.707214 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 938 | 1218 | 37.571667 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 629 | 852 | 22.202324 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 754 | 768 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 896 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 870 | 896 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_015082354.1 | ABC transporter C family member 3 [Solanum pennellii] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology