Basic Information
Locus ID:
gene-LOC107026003
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 76744542 | 76752188 | - | gene-LOC107026003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 98,060.28 Da | 52.38 | 78.89 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 741 | 776 | 0.0021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 658 | 692 | 1.3E-4 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 86 | 333 | 2.38E-17 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 568 | 878 | 2.09E-53 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 89 | 345 | 5.2E-23 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 545 | 881 | 5.3E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 652 | 692 | 2.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 785 | 824 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 610 | 649 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 564 | 599 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 695 | 734 | 0.68 | IPR001680 |
| SMART | SM00320 | WD40_4 | 840 | 879 | 420.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 738 | 776 | 1.2E-6 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 336 | 9.573678 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 659 | 696 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 745 | 778 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 659 | 701 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 745 | 778 | 10.337415 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 679 | 693 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 763 | 777 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 636 | 650 | 2.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 763 | 777 | 2.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 679 | 693 | 2.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_015082307.1 | protein SPA1-RELATED 4-like [Solanum pennellii] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology