Basic Information
Locus ID:
gene-LOC107025894
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 103900026 | 103901306 | + | gene-LOC107025894 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 48,880.22 Da | 38.43 | 81.15 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 2 | 40 | 2.0E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 69 | 2.22E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 39 | 9.7E-7 | - |
| SMART | SM00256 | fbox_2 | 1 | 40 | 6.7E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 192 | 374 | 8.8E-14 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 39 | 8.623154 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_015082163.1 | F-box protein CPR1-like [Solanum pennellii] | 0 |
| Q9T0J4 | Putative F-box protein At4g38870 OS=Arabidopsis thaliana OX=3702 GN=At4g38870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 7 | gene-LOC132601986, gene-LOC132601987, gene-LOC132603133 ... |
| Solanaceae | Solanum chilense | 6 | SOLCI000005900, SOLCI001662300, SOLCI001819600 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107001609, gene-LOC107010212, gene-LOC107025894 ... |