Basic Information
Locus ID:
gene-LOC107025848
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
NTMC2T2.1
Description:
Calcium lipid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 2672157 | 2683755 | - | gene-LOC107025848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 63,134.36 Da | 25.37 | 100.16 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 366 | 3.22969E-25 | - |
| CDD | cd00030 | C2 | 439 | 535 | 6.32214E-27 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 1.1E-13 | IPR039010 |
| Pfam | PF00168 | C2 domain | 437 | 539 | 1.7E-24 | IPR000008 |
| Pfam | PF00168 | C2 domain | 262 | 366 | 8.7E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 433 | 556 | 1.99E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 391 | 8.68E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 423 | 555 | 1.2E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 255 | 389 | 2.6E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 438 | 536 | 8.8E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 263 | 363 | 4.8E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 20.449293 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 28.755821 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 419 | 537 | 20.754667 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 480 | 493 | 3.4E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 454 | 466 | 3.4E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 502 | 510 | 3.4E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_015082099.1 | synaptotagmin-5-like [Solanum pennellii] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology