Basic Information
Locus ID:
gene-LOC107025846
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 78188856 | 78196140 | + | gene-LOC107025846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 82,167.20 Da | 49.28 | 89.31 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 357 | 653 | 2.00201E-165 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 40 | 339 | 4.97116E-166 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 363 | 649 | 1.5E-30 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 39 | 333 | 1.88E-41 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 357 | 654 | 5.23E-41 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 39 | 336 | 7.4E-37 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 357 | 654 | 1.9E-46 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 356 | 654 | 36.237637 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 40 | 340 | 37.747974 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 729 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 709 | 729 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_015082097.1 | glycerophosphodiester phosphodiesterase GDPDL4 [Solanum pennellii] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology