Basic Information
Locus ID:
gene-LOC107025653
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Protein present in Fab1, YOTB, Vac1, and EEA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7556800 | 7584026 | + | gene-LOC107025653 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 197,596.59 Da | 48.27 | 74.39 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03334 | Fab1_TCP | 376 | 648 | 4.11009E-135 | - |
| CDD | cd17300 | PIPKc_PIKfyve | 1501 | 1764 | 1.2921E-149 | IPR044769 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1540 | 1707 | 5.4E-35 | IPR002498 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 395 | 644 | 6.3E-35 | IPR002423 |
| Pfam | PF01363 | FYVE zinc finger | 35 | 104 | 3.0E-17 | IPR000306 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 442 | 614 | 2.72E-43 | IPR027409 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 33 | 109 | 1.44E-19 | IPR011011 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1495 | 1764 | 8.5E-80 | - |
| Gene3D | G3DSA:3.30.810.10 | - | 1623 | 1765 | 4.6E-42 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 110 | 2.5E-21 | IPR013083 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 441 | 614 | 1.0E-54 | IPR027409 |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1463 | 1621 | 3.3E-37 | IPR027484 |
| SMART | SM00330 | PIPK_2 | 1474 | 1765 | 1.7E-127 | IPR002498 |
| SMART | SM00064 | fyve_4 | 30 | 105 | 2.0E-20 | IPR000306 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1440 | 1764 | 57.990665 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 38 | 104 | 12.851293 | IPR017455 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1147 | 1173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1147 | 1165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 714 | - | - |
| Coils | Coil | Coil | 1084 | 1104 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_015081902.1 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like [Solanum pennellii] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology