Basic Information
Locus ID:
gene-LOC107025498
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 74197644 | 74200905 | + | gene-LOC107025498 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 65,710.35 Da | 44.59 | 106.58 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 61 | 3.8E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 139 | 317 | 2.83E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 20 | 64 | 2.35E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 92 | 522 | 6.2E-12 | IPR032675 |
| SMART | SM00256 | fbox_2 | 27 | 68 | 3.9E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 21 | 68 | 8.994076 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26340.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_015081772.1 | F-box/FBD/LRR-repeat protein At1g13570-like [Solanum pennellii] | 0 |
| Q8H1R7 | F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana OX=3702 GN=At4g26340 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 6 | gene-LOC132612692, gene-LOC132617794, gene-LOC132619153 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI002523600, SOLCI002523700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107025266, gene-LOC107025267, gene-LOC107025498 |