Basic Information
Locus ID:
gene-LOC107025285
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 97270508 | 97272640 | - | gene-LOC107025285 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 38,206.58 Da | 40.80 | 90.38 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 290 | 332 | 4.48043E-14 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 23 | 92 | 1.4E-15 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 290 | 332 | 5.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 289 | 336 | 2.09E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 258 | 337 | 1.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 290 | 331 | 2.4E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 290 | 332 | 12.1057 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.2 | - | 0 |
| RefSeq | XP_015081560.1 | putative RING-H2 finger protein ATL21A [Solanum pennellii] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology