Basic Information
Locus ID:
gene-LOC107025267
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 74183868 | 74190897 | + | gene-LOC107025267 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 109,396.30 Da | 38.63 | 110.27 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 15 | 50 | 2.5E-5 | IPR001810 |
| Pfam | PF00646 | F-box domain | 507 | 545 | 7.9E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 504 | 548 | 1.31E-7 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 137 | 409 | 2.69E-9 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 614 | 877 | 9.42E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 87 | 1.44E-9 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 118 | 456 | 3.1E-7 | IPR032675 |
| SMART | SM00256 | fbox_2 | 19 | 59 | 2.3E-4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 511 | 552 | 0.0012 | IPR001810 |
| Coils | Coil | Coil | 417 | 437 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49030.1 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_027774349.1 | uncharacterized protein LOC107025267 [Solanum pennellii] | 0 |
| Q9FX89 | Putative F-box protein At1g49610 OS=Arabidopsis thaliana OX=3702 GN=At1g49610 PE=4 SV=2 | 0 | |
| TrEMBL | A0A6N2CC84 | F-box domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_008927 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 6 | gene-LOC132612692, gene-LOC132617794, gene-LOC132619153 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI002523600, SOLCI002523700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107025266, gene-LOC107025267, gene-LOC107025498 |