Basic Information
Locus ID:
gene-LOC107025258
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 72991969 | 72993093 | + | gene-LOC107025258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 34,685.19 Da | 44.30 | 87.40 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 43 | 1.9E-5 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 137 | 234 | 2.0E-5 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 75 | 3.01E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 44 | 1.0E-5 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 133 | 232 | 3.2E-11 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015081539.2 | putative F-box protein At1g47300 [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 3 | gene-LOC132619443, gene-LOC132619444, gene-LOC132628912 |
| Solanaceae | Solanum chilense | 3 | SOLCI001075800, SOLCI004757200, SOLCI004757300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107019849, gene-LOC107025258, gene-LOC107026181 |