Basic Information
Locus ID:
gene-LOC107024868
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
COPG
Description:
intracellular protein transport
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 14969155 | 14970530 | + | gene-LOC107024868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 33,266.20 Da | 30.39 | 89.54 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04476 | RPA1_DBD_C | 71 | 235 | 3.69651E-25 | IPR013955 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 89 | 204 | 7.3E-16 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 65 | 235 | 6.68E-23 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 53 | 232 | 1.2E-29 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_027774520.1 | replication protein A 70 kDa DNA-binding subunit D-like [Solanum pennellii] | 0 |
| TrEMBL | A0A3Q7J938 | Rep_fac-A_C domain-containing protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology