Basic Information
Locus ID:
gene-LOC107024787
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Serine-threonine protein kinase, plant-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6238752 | 6242497 | + | gene-LOC107024787 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 125,028.84 Da | 34.97 | 108.73 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 164 | 224 | 1.1E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 64 | 3.8E-6 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 849 | 1118 | 1.4E-46 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 680 | 739 | 7.3E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 825 | 1121 | 1.3E-72 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 24 | 369 | 8.84E-58 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 516 | 767 | 3.85E-58 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 372 | 572 | 8.5E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 923 | 1130 | 1.6E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 474 | 779 | 6.2E-84 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 817 | 922 | 2.4E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 139 | 9.6E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 255 | 473 | 1.3E-54 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 140 | 254 | 1.5E-24 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 356 | 383 | 350.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 284 | 307 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 187 | 213 | 310.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 260 | 283 | 220.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 582 | 608 | 490.0 | - |
| SMART | SM00369 | LRR_typ_2 | 606 | 630 | 70.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 678 | 699 | 98.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 430 | 456 | 710.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 308 | 334 | 43.0 | - |
| SMART | SM00369 | LRR_typ_2 | 163 | 187 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 356 | 381 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 211 | 234 | 55.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 406 | 430 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 582 | 605 | 64.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 847 | 1124 | 2.2E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 115 | 139 | 4.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 91 | 114 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 454 | 477 | 410.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 678 | 701 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 702 | 725 | 56.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 726 | 751 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 260 | 284 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 654 | 677 | 300.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 847 | 1128 | 35.806381 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 966 | 978 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 853 | 875 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47580.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_015081234.1 | receptor kinase-like protein Xa21 [Solanum pennellii] | 0 |
| Q1MX30 | Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 10 | gene-LOC132613285, gene-LOC132613458, gene-LOC132613462 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI004842000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016360, gene-LOC107024787 |