Basic Information
Locus ID:
gene-LOC107024706
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 244327 | 245341 | + | gene-LOC107024706 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.46 | 30,332.44 Da | 30.15 | 79.43 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 1 | 261 | 2.0E-63 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1 | 270 | 1.74E-54 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 167 | 232 | 3.8E-12 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1 | 261 | 2.8E-84 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 166 | 232 | 2.8E-84 | IPR029070 |
| SMART | SM00636 | 2g34 | 1 | 261 | 1.1E-51 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 1 | 277 | 57.090157 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 39 | 47 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_015081176.2 | class V chitinase CHIT5-like [Solanum pennellii] | 0 |
| A0A1B1J8Z2 | Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology