Basic Information
Locus ID:
gene-LOC107024651
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 245547 | 247227 | - | gene-LOC107024651 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 41,717.89 Da | 35.16 | 76.05 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 27 | 362 | 1.78133E-138 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 32 | 356 | 2.1E-75 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 32 | 358 | 5.38E-69 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 262 | 327 | 5.76E-13 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 42 | 356 | 6.2E-103 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 261 | 327 | 6.2E-103 | IPR029070 |
| SMART | SM00636 | 2g34 | 28 | 356 | 2.9E-99 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 28 | 372 | 65.554665 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 132 | 140 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19750.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_015081131.1 | nod factor hydrolase protein 1-like [Solanum pennellii] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology