Basic Information
Locus ID:
gene-LOC107024579
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 2503678 | 2505631 | + | gene-LOC107024579 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 45,827.46 Da | 75.52 | 73.58 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 121 | 164 | 2.54408E-18 | - |
| Pfam | PF13639 | Ring finger domain | 121 | 164 | 3.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 103 | 169 | 4.04E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 170 | 3.7E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 122 | 163 | 8.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 122 | 164 | 12.784338 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 344 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015081054.1 | RING-H2 finger protein ATL43 [Solanum pennellii] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology