Basic Information
Locus ID:
gene-LOC107024565
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 258046 | 260541 | + | gene-LOC107024565 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 41,823.29 Da | 29.71 | 77.05 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 24 | 361 | 7.36786E-140 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 30 | 355 | 3.6E-80 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 258 | 327 | 6.54E-14 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 30 | 364 | 3.22E-63 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 257 | 326 | 1.8E-122 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 42 | 355 | 1.8E-122 | - |
| SMART | SM00636 | 2g34 | 26 | 355 | 1.5E-103 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 26 | 371 | 68.676613 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_015081043.1 | class V chitinase-like [Solanum pennellii] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology