Basic Information
Locus ID:
gene-LOC107024358
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
PAN-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 72402790 | 72412062 | - | gene-LOC107024358 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 114,401.97 Da | 39.73 | 84.19 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 48 | 162 | 1.91499E-22 | IPR001480 |
| CDD | cd14066 | STKc_IRAK | 702 | 964 | 4.21562E-91 | - |
| CDD | cd01098 | PAN_AP_plant | 347 | 418 | 7.63898E-14 | - |
| Pfam | PF08276 | PAN-like domain | 346 | 401 | 2.0E-9 | IPR003609 |
| Pfam | PF00954 | S-locus glycoprotein domain | 228 | 314 | 1.5E-20 | IPR000858 |
| Pfam | PF01453 | D-mannose binding lectin | 85 | 175 | 6.8E-15 | IPR001480 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 699 | 963 | 1.1E-43 | IPR001245 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 71 | 211 | 2.62E-18 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 680 | 994 | 3.24E-80 | IPR011009 |
| Gene3D | G3DSA:2.90.10.10 | - | 32 | 160 | 2.0E-13 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 667 | 771 | 1.2E-34 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 772 | 971 | 6.5E-58 | - |
| SMART | SM00220 | serkin_6 | 696 | 964 | 1.5E-30 | IPR000719 |
| SMART | SM00108 | blect_4 | 43 | 162 | 2.3E-16 | IPR001480 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 696 | 979 | 37.785141 | IPR000719 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 37 | 160 | 12.670848 | IPR001480 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 338 | 429 | 8.792074 | IPR003609 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 817 | 829 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03230.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_027774491.1 | LOW QUALITY PROTEIN: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Solanum pennellii] | 0 |
| Q9ZR08 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana OX=3702 GN=At4g03230 PE=3 SV=3 | 0 | |
| TrEMBL | A0A6N2B5D2 | Non-specific serine/threonine protein kinase OS=Solanum chilense OX=4083 GN=EJD97_016217 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah000566, Ah000567 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_5g117620, BVRB_5g117630, BVRB_5g117640, BVRB_5g117650 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30579, Sbi_jg58673 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28540 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00014903, GOSA_00014906, GOSA_00014908, GOSA_00014913 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl55195, Sgl55196, Sgl55199, Sgl60445, Sgl60447 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008135, gene:ENSEOMG00000021474 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0023300, CQ.Regalona.r1.5BG0024780 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30019010, pistato.v30019020 |
| Apiaceae | Apium graveolens | 3 | Ag11G03332, Ag11G03333, Ag11G03334 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G02911, Ftri4G05414 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G03230.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03270.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 11 | Ceq02G2493, Ceq02G2500, Ceq02G2604, Ceq04G1183, Ceq05G2137 ... |
| Casuarinaceae | Casuarina glauca | 10 | Cgl02G2587, Cgl02G2592, Cgl04G1341, Cgl07G0430, Cgl07G0432 ... |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG04.1983, evm.TU.LG04.1984, evm.TU.LG04.1985 ... |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.LG01.2451, evm.TU.LG01.2452, evm.TU.LG01.2453 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1455, evm.TU.Scaffold_5_RagTag.1457 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11949, nbisL1-mrna-11951 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20422 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11031 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.837 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014027 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10263, nbisL1-mrna-10365 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15412, nbisL1-mrna-7222, nbisL1-mrna-7223 |
| Salicaceae | Populus euphratica | 3 | populus_peu16955, populus_peu18614, populus_peu18615 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132619497, gene-LOC132623522 |
| Solanaceae | Solanum chilense | 2 | SOLCI003380300, SOLCI004537700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010949, gene-LOC107024358 |