Basic Information
Locus ID:
gene-LOC107024030
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 69821438 | 69829211 | - | gene-LOC107024030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 48,928.71 Da | 39.51 | 89.89 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 217 | 295 | 3.0E-6 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 113 | 411 | 1.65E-33 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 107 | 419 | 4.4E-65 | IPR015943 |
| SMART | SM00320 | WD40_4 | 373 | 413 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 242 | 279 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 370 | 7.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 238 | 0.61 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 381 | 411 | 8.703868 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 112 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_015080394.2 | SEC12-like protein 2 [Solanum pennellii] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology