Basic Information
Locus ID:
gene-LOC107023873
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 56421218 | 56433926 | - | gene-LOC107023873 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 98,632.95 Da | 49.59 | 78.67 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 718 | 870 | 1.23137E-61 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 278 | 869 | 2.9E-83 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 276 | 872 | 1.22E-107 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 695 | 875 | 5.9E-57 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 269 | 508 | 1.6E-65 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 278 | 872 | 56.139622 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 815 | 832 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 279 | 294 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_015080186.1 | ubiquitin carboxyl-terminal hydrolase 8 [Solanum pennellii] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology