Basic Information
Locus ID:
gene-LOC107023794
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 55642477 | 55645354 | + | gene-LOC107023794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.70 | 50,423.82 Da | 44.45 | 72.50 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 160 | 429 | 6.43058E-43 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 176 | 234 | 6.9E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 344 | 0.0084 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 258 | 293 | 1.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 395 | 429 | 9.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 141 | 433 | 8.55E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 84 | 432 | 6.4E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 254 | 293 | 4.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 390 | 429 | 5.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 171 | 209 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 212 | 250 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 344 | 9.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 387 | 220.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 397 | 430 | 10.416506 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 261 | 293 | 11.5765 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 261 | 293 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 177 | 218 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 397 | 430 | 12.513543 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 416 | 430 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_015080088.1 | cell division cycle 20.2, cofactor of APC complex-like [Solanum pennellii] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology