Basic Information
Locus ID:
gene-LOC107023548
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 50030274 | 50035780 | + | gene-LOC107023548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 45,550.77 Da | 47.87 | 71.63 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 140 | 214 | 3.01846E-51 | - |
| CDD | cd12352 | RRM1_TIA1_like | 56 | 126 | 1.66302E-34 | - |
| CDD | cd12354 | RRM3_TIA1_like | 260 | 335 | 4.25116E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 122 | 2.7E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 262 | 329 | 3.8E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 211 | 1.1E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 52 | 215 | 4.12E-43 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 251 | 345 | 2.04E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 239 | 339 | 9.3E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 135 | 3.2E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 136 | 238 | 1.4E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 140 | 213 | 5.9E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 261 | 331 | 4.4E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 55 | 124 | 1.4E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 260 | 335 | 14.948091 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 139 | 217 | 16.807129 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 128 | 14.948091 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 257 | - | - |
| Coils | Coil | Coil | 3 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_015079759.1 | oligouridylate-binding protein 1B-like isoform X1 [Solanum pennellii] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology