Basic Information
Locus ID:
gene-LOC107023468
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 58129616 | 58134813 | - | gene-LOC107023468 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 71,937.50 Da | 45.42 | 100.02 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 260 | 302 | 5.37243E-28 | - |
| Pfam | PF04564 | U-box domain | 256 | 326 | 5.5E-23 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 547 | 586 | 2.8E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 465 | 503 | 1.2E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 382 | 421 | 4.5E-11 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 351 | 634 | 8.28E-54 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 331 | 3.42E-30 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 118 | 1.0E-10 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 338 | 655 | 1.7E-58 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 329 | 8.9E-30 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 259 | 322 | 2.5E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 588 | 628 | 82.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 464 | 504 | 1.2 | IPR000225 |
| SMART | SM00185 | arm_5 | 423 | 463 | 0.12 | IPR000225 |
| SMART | SM00185 | arm_5 | 382 | 422 | 1.0E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 505 | 545 | 490.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 546 | 586 | 8.2 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 255 | 329 | 43.283775 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 393 | 435 | 15.1374 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 661 | - | - |
| Coils | Coil | Coil | 619 | 639 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_015079655.1 | U-box domain-containing protein 13-like isoform X1 [Solanum pennellii] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology