Basic Information
Locus ID:
gene-LOC107023444
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
NPL4 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 60584455 | 60588856 | - | gene-LOC107023444 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 46,164.17 Da | 33.56 | 89.64 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17055 | Ubl_AtNPL4_like | 1 | 84 | 5.8019E-22 | - |
| CDD | cd08061 | MPN_NPL4 | 118 | 368 | 9.17254E-77 | IPR007717 |
| Pfam | PF05021 | NPL4 family | 167 | 281 | 4.0E-12 | IPR007717 |
| Pfam | PF11543 | Nuclear pore localisation protein NPL4 | 1 | 50 | 3.7E-6 | IPR024682 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 89 | 5.3E-18 | IPR029071 |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 136 | 311 | 2.6E-5 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 100 | 1.5E-40 | - |
| ProSiteProfiles | PS50249 | MPN domain profile. | 129 | 270 | 19.121166 | IPR037518 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47970.1 | Nuclear pore localisation protein NPL4. | 0 |
| RefSeq | XP_015079623.1 | NPL4-like protein 2 [Solanum pennellii] | 0 |
| O82264 | NPL4-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At2g47970 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10071, jg2502 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6274 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012583 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g112290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27910, Sbi_jg32588 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7441 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012023 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53099, Sgl58376 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000010019, gene:ENSEOMG00000033897 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0012500, CQ.Regalona.r1.8BG0012550 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30011250 |
| Apiaceae | Apium graveolens | 1 | Ag11G03085 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G002660, COCNU_12G001680 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719699, gene-LOC103723509 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1387.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G22842, Ftri12G18856 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G47970.1, AT3G63000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001466m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g29890.v2.2, Sp5g00520.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g061300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1631 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1692 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g05300 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0617s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g22970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.253 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011645, Pov_00015301 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G29054 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1822, BH02.1769, CH02.2000 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0017370, gene-QOZ80_1BG0066530 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0178620.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_050507, gene-QYE76_050524 |
| Poaceae | Oryza coarctata | 2 | Oco01G010540, Oco02G010950 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g27990.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G075600, gene-BS78_10G044100 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0200319, Pt_Chr0200338, Pt_Chr0603536 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G007360, Chr04G019930, Chr06G020870 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G283700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG018030, gene_TRIDC6BG023920 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G133900.1.cds1, TraesCS6B02G162100.2.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb098320_P001, Zm00001eb146560_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21697, nbis-gene-36691 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10361, Zma_g25018 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.186, evm.TU.LG04.566 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10590 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.920, evm.TU.Scaffold_9_RagTag.866 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11423 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19932, nbisL1-mrna-7728 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11540 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.259 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013988 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10036 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7536 |
| Salicaceae | Populus euphratica | 3 | populus_peu01094, populus_peu27191, populus_peu38181 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608302 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023444 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6270 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0298 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20210.v3.1 |