Basic Information
Locus ID:
gene-LOC107023319
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 58912620 | 58920624 | + | gene-LOC107023319 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 186,235.16 Da | 48.61 | 80.95 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 1482 | 1542 | 0.00312637 | - |
| Pfam | PF16135 | Tify domain binding domain | 1193 | 1244 | 1.5E-20 | IPR032308 |
| Pfam | PF05641 | Agenet domain | 28 | 104 | 1.0E-11 | IPR008395 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1251 | 1294 | 6.2E-10 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1467 | 1573 | 4.58E-9 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1336 | 1394 | 1.2E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1234 | 1335 | 2.3E-15 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 1436 | 1572 | 1.3E-6 | - |
| SMART | SM00249 | PHD_3 | 1264 | 1334 | 4.7E-8 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 341 | 353 | 0.7 | IPR017956 |
| SMART | SM00743 | agenet_At_2 | 109 | 166 | 2.0E-6 | IPR014002 |
| SMART | SM00249 | PHD_3 | 1335 | 1393 | 0.098 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 747 | 759 | 230.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 584 | 596 | 0.7 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1262 | 1336 | 9.3832 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1442 | 1587 | 10.371214 | IPR000182 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1265 | 1333 | - | IPR019786 |
| PRINTS | PR00929 | AT-hook-like domain signature | 584 | 594 | 8.7E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 688 | 699 | 8.7E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 745 | 755 | 8.7E-6 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1120 | 1156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1132 | 1148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 910 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 931 | 956 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 891 | 976 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 976 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 914 | 930 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 762 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58610.4 | - | 0 |
| RefSeq | XP_027773559.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC107023319 [Solanum pennellii] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3Q7HXM3 | Agenet domain-containing protein OS=Solanum lycopersicum OX=4081 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology