Basic Information
Locus ID:
gene-LOC107023258
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1841728 | 1843229 | + | gene-LOC107023258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 45,619.88 Da | 46.93 | 100.37 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 4.37677E-24 | - |
| Pfam | PF04564 | U-box domain | 6 | 76 | 3.9E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 96 | 370 | 6.72E-20 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 81 | 5.55E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | 5.7E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 92 | 397 | 2.6E-24 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 74 | 1.2E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 81 | 35.092659 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_015079411.1 | E3 ubiquitin-protein ligase PUB23-like [Solanum pennellii] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology