Basic Information
Locus ID:
gene-LOC107023212
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein 2-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 51262090 | 51268180 | - | gene-LOC107023212 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 47,595.58 Da | 61.28 | 80.75 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 232 | 275 | 2.96969E-23 | - |
| CDD | cd02123 | PA_C_RZF_like | 7 | 162 | 4.4322E-53 | IPR044744 |
| Pfam | PF02225 | PA domain | 78 | 142 | 3.6E-8 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 232 | 275 | 3.3E-12 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 82 | 148 | 7.98E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 212 | 287 | 3.53E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 280 | 1.4E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 13 | 156 | 6.4E-27 | - |
| SMART | SM00184 | ring_2 | 233 | 274 | 1.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 233 | 275 | 12.577796 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 425 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_015079316.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2-like [Solanum pennellii] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology