Basic Information
Locus ID:
gene-LOC107023180
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1845301 | 1847583 | + | gene-LOC107023180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 46,929.42 Da | 49.33 | 99.38 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 21 | 64 | 2.68822E-23 | - |
| Pfam | PF04564 | U-box domain | 17 | 88 | 1.1E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 92 | 4.42E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 106 | 381 | 5.76E-20 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 103 | 406 | 3.5E-23 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 95 | 5.3E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 20 | 84 | 1.7E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 16 | 91 | 35.782623 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_015079307.1 | E3 ubiquitin-protein ligase PUB23-like [Solanum pennellii] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology