Basic Information
Locus ID:
gene-LOC107023054
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 53233412 | 53243637 | + | gene-LOC107023054 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 116,616.86 Da | 41.99 | 83.82 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 41 | 318 | 0.0 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 359 | 450 | 8.0E-21 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 42 | 354 | 1.9E-94 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 607 | 824 | 1.1E-45 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 906 | 1011 | 3.6E-10 | IPR041147 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 359 | 456 | 5.23E-28 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 30 | 355 | 1.04E-110 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 464 | 1015 | 3.45E-141 | IPR011013 |
| Gene3D | G3DSA:2.70.98.30 | - | 603 | 872 | 2.8E-94 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 323 | 401 | 6.2E-28 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 41 | 322 | 4.1E-125 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 480 | 597 | 5.4E-28 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 402 | 457 | 1.5E-22 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 893 | 1018 | 1.7E-35 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 359 | 433 | 6.3E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_015079090.1 | probable alpha-mannosidase At5g13980 [Solanum pennellii] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology