Basic Information
Locus ID:
gene-LOC107022972
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Pyruvate decarboxylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 58964206 | 58967514 | + | gene-LOC107022972 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 66,767.29 Da | 33.15 | 85.73 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 387 | 595 | 3.00256E-83 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 28 | 189 | 3.37567E-94 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 222 | 338 | 5.5E-20 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 455 | 582 | 1.2E-14 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 25 | 196 | 1.8E-35 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 387 | 602 | 4.3E-37 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 25 | 203 | 8.0E-45 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 211 | 364 | 1.4E-31 | IPR029035 |
| Gene3D | G3DSA:3.40.50.1220 | - | 212 | 374 | 1.7E-41 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 380 | 597 | 4.8E-54 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 22 | 199 | 1.6E-61 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 20 | 437 | 5.7E-149 | IPR012110 |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 441 | 607 | 1.9E-56 | IPR012110 |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 472 | 491 | - | IPR000399 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_015079015.1 | pyruvate decarboxylase 2 isoform X1 [Solanum pennellii] | 0 |
| P51846 | Pyruvate decarboxylase 2 OS=Nicotiana tabacum OX=4097 GN=PDC2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology