Basic Information
Locus ID:
gene-LOC107022959
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 43024991 | 43027488 | - | gene-LOC107022959 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 74,570.70 Da | 44.32 | 109.96 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 282 | 324 | 9.89822E-22 | - |
| Pfam | PF04564 | U-box domain | 278 | 349 | 3.7E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 424 | 461 | 4.3E-10 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 394 | 671 | 1.98E-40 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 268 | 352 | 1.32E-29 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 15 | 129 | 2.9E-7 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 352 | 1.7E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 364 | 512 | 5.3E-27 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 513 | 678 | 3.1E-16 | IPR011989 |
| SMART | SM00185 | arm_5 | 422 | 462 | 2.8E-6 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 281 | 344 | 3.3E-29 | IPR003613 |
| SMART | SM00185 | arm_5 | 463 | 504 | 28.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 547 | 587 | 8.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 588 | 629 | 91.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 506 | 546 | 31.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 277 | 351 | 37.772903 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 433 | 475 | 13.2474 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29340.1 | plant U-box 17. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato. | 0 |
| RefSeq | XP_015079003.1 | U-box domain-containing protein 1-like [Solanum pennellii] | 0 |
| E4NKF8 | U-box domain-containing protein 1 OS=Medicago truncatula OX=3880 GN=PUB1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14251 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24321 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035351 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21470, Sbi_jg22346 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16274 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008862 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62819, Sgl67435 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000022197, gene:ENSEOMG00000051024 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1BG0020130, CQ.Regalona.r1.1BG0020140 ... |
| Apiaceae | Apium graveolens | 2 | Ag8G00005, Ag8G00428 |
| Arecaceae | Cocos nucifera | 1 | scaffold140503G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722788 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G08961 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0098 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0109 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1901 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011778 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.931 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27407 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16811, nbisL1-mrna-7415 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1472 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.225 |
| Salicaceae | Populus euphratica | 2 | populus_peu06578, populus_peu20458 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609025 |
| Solanaceae | Solanum chilense | 1 | SOLCI006082200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022959 |