Basic Information
Locus ID:
gene-LOC107022889
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 45393325 | 45395720 | + | gene-LOC107022889 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.34 | 15,653.43 Da | 44.16 | 79.79 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 49 | 117 | 1.9E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 44 | 132 | 1.48E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 44 | 137 | 8.8E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 48 | 129 | 7.6E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 47 | 133 | 12.423892 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.2 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_015078952.1 | RNA-binding protein 1-like [Solanum pennellii] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology