Basic Information
Locus ID:
gene-LOC107022876
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 1249568 | 1250087 | + | gene-LOC107022876 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 17,641.87 Da | 45.89 | 77.42 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18322 | BTB_POZ_SKP1 | 7 | 116 | 1.80592E-36 | - |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 6 | 65 | 1.4E-22 | IPR016073 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 102 | 149 | 2.1E-22 | IPR016072 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 74 | 148 | 1.44E-24 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 7 | 68 | 1.85E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 3 | 151 | 7.1E-57 | IPR011333 |
| SMART | SM00512 | skp1_3 | 5 | 101 | 7.3E-33 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 1 | 151 | 2.4E-52 | IPR016897 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75950.1 | S phase kinase-associated protein 1. SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif. | 0 |
| RefSeq | XP_015078940.1 | SKP1-like protein 1 [Solanum pennellii] | 0 |
| Q39255 | SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 3 | gene-LOC132622366, gene-LOC132622780, gene-LOC132622877 |
| Solanaceae | Solanum chilense | 2 | SOLCI001699700, SOLCI006106500 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107014034, gene-LOC107014072, gene-LOC107022876 |