halophFGD

Basic Information

Locus ID: gene-LOC107022842

Species & Taxonomic ID: Solanum pennellii & 28526

Genome Assembly: GCF_001406875.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	72764658	72767452	+	gene-LOC107022842

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.11	67,923.23 Da	56.33	43.40	-1.56

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	69	95	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	256	362	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	484	522	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	416	598	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	256	280	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	308	323	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	438	461	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	531	554	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	33	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	332	355	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	559	588	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	416	437	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	152	172	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	59	105	-	-
Coils	Coil	Coil	416	462	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_015078910.1	probable WRKY transcription factor protein 1 [Solanum pennellii]	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.681.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g04130
Solanaceae	Lycium barbarum	44	gene-LOC132599789, gene-LOC132601267, gene-LOC132601380 ... gene-LOC132601883, gene-LOC132601893, gene-LOC132601922, gene-LOC132606002, gene-LOC132607734, gene-LOC132609505, gene-LOC132610402, gene-LOC132611827, gene-LOC132612098, gene-LOC132612101, gene-LOC132612132, gene-LOC132612161, gene-LOC132612301, gene-LOC132612811, gene-LOC132612943, gene-LOC132613748, gene-LOC132615817, gene-LOC132617405, gene-LOC132619559, gene-LOC132619608, gene-LOC132620049, gene-LOC132623978, gene-LOC132624193, gene-LOC132624351, gene-LOC132624353, gene-LOC132624363, gene-LOC132628281, gene-LOC132628294, gene-LOC132628470, gene-LOC132629150, gene-LOC132631066, gene-LOC132631437, gene-LOC132631524, gene-LOC132631534, gene-LOC132637239, gene-LOC132637284, gene-LOC132639155, gene-LOC132639331, gene-LOC132639829, gene-LOC132643879, gene-LOC132644615
Solanaceae	Solanum chilense	37	SOLCI000177100, SOLCI000563900, SOLCI001032000 ... SOLCI001267600, SOLCI001302000, SOLCI001561300, SOLCI001623700, SOLCI001652900, SOLCI002142100, SOLCI002298300, SOLCI002435500, SOLCI002634400, SOLCI002750700, SOLCI003008500, SOLCI003121300, SOLCI003335900, SOLCI003420000, SOLCI003569900, SOLCI003899300, SOLCI003914900, SOLCI004089200, SOLCI004107200, SOLCI004164900, SOLCI004492500, SOLCI004715900, SOLCI004719400, SOLCI004929300, SOLCI004976100, SOLCI005111200, SOLCI005325900, SOLCI005500300, SOLCI006148400, SOLCI006625600, SOLCI006891100, SOLCI007303800, SOLCI007398600, SOLCI007411400
Solanaceae	Solanum pennellii	3	gene-LOC107022842, gene-LOC114076821, gene-LOC114077933