Basic Information
Locus ID:
gene-LOC107022820
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 54325386 | 54332824 | - | gene-LOC107022820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 144,202.55 Da | 44.52 | 87.36 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 40 | 168 | 8.31432E-18 | - |
| CDD | cd12108 | Hr-like | 596 | 736 | 7.18916E-18 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1138 | 1181 | 1.08397E-19 | - |
| Pfam | PF13639 | Ring finger domain | 1137 | 1180 | 6.1E-9 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 1186 | 1243 | 6.0E-22 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 39 | 169 | 1.3E-7 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 1009 | 1083 | 4.6E-16 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1002 | 1065 | 6.93E-14 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1128 | 1186 | 9.32E-10 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1075 | 1132 | 1.24E-14 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 1210 | 1245 | 2.8E-15 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 592 | 756 | 1.1E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1132 | 1182 | 2.3E-11 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 35 | 185 | 1.6E-21 | - |
| SMART | SM00184 | ring_2 | 1139 | 1180 | 9.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1139 | 1181 | 11.648357 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1074 | 1138 | 26.000383 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1002 | 1071 | 23.093817 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 870 | 890 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_027773511.1 | LOW QUALITY PROTEIN: zinc finger protein BRUTUS-like At1g74770 [Solanum pennellii] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3Q7H1B5 | Zinc finger protein BRUTUS-like At1g18910 OS=Solanum lycopersicum OX=4081 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology