Basic Information
Locus ID:
gene-LOC107022595
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 49883017 | 49886253 | - | gene-LOC107022595 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 47,128.61 Da | 43.37 | 92.28 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 256 | 386 | 9.62161E-61 | - |
| CDD | cd17939 | DEADc_EIF4A | 47 | 245 | 2.72113E-132 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 269 | 377 | 6.9E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 68 | 229 | 1.4E-39 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 112 | 397 | 9.35E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 252 | 416 | 4.0E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 33 | 251 | 7.6E-66 | IPR027417 |
| SMART | SM00487 | ultradead3 | 62 | 259 | 1.5E-55 | IPR014001 |
| SMART | SM00490 | helicmild6 | 296 | 377 | 1.5E-31 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 74 | 244 | 28.704819 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 255 | 416 | 25.810627 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 43 | 71 | 10.40907 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 190 | 198 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_010322836.1 | eukaryotic initiation factor 4A-8 isoform X1 [Solanum lycopersicum] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology