Basic Information
Locus ID:
gene-LOC107022576
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 56331897 | 56351151 | + | gene-LOC107022576 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 128,542.49 Da | 38.71 | 80.61 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 47 | 170 | 8.67911E-34 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 191 | 511 | 7.57936E-138 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 193 | 506 | 3.9E-45 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 610 | 862 | 7.2E-73 | IPR024729 |
| Pfam | PF00917 | MATH domain | 54 | 172 | 8.0E-16 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 872 | 1081 | 2.0E-53 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 189 | 537 | 2.94E-87 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 45 | 178 | 2.13E-38 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 670 | 787 | 1.8E-39 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 788 | 885 | 2.5E-22 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 43 | 189 | 1.8E-44 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 190 | 510 | 3.7E-82 | - |
| SMART | SM00061 | math_3 | 47 | 151 | 1.7E-13 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 45 | 170 | 34.275177 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 193 | 509 | 38.429539 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 428 | 445 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 194 | 209 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1086 | 1105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_015078657.1 | ubiquitin carboxyl-terminal hydrolase 13-like [Solanum pennellii] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology