Basic Information
Locus ID:
gene-LOC107022532
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 57149327 | 57153958 | - | gene-LOC107022532 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 87,873.92 Da | 59.87 | 66.35 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 713 | 752 | 2.33225E-16 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 711 | 757 | 7.3E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 712 | 758 | 6.13E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 698 | 763 | 8.6E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 713 | 752 | 10.173057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 317 | - | - |
| Coils | Coil | Coil | 759 | 765 | - | - |
| Coils | Coil | Coil | 639 | 666 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_027773229.1 | uncharacterized protein LOC107022532 [Solanum pennellii] | 0 |
| TrEMBL | A0A3Q7HW98 | RING-type domain-containing protein OS=Solanum lycopersicum OX=4081 GN=101261337 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology