Basic Information
Locus ID:
gene-LOC107022317
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
EBF1
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 39826243 | 39829203 | + | gene-LOC107022317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 67,114.75 Da | 43.31 | 110.98 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 537 | 556 | 0.026 | IPR001611 |
| Pfam | PF00646 | F-box domain | 61 | 97 | 0.0016 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 241 | 264 | 1.5 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 138 | 263 | 3.14E-21 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 47 | 93 | 8.24E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 273 | 618 | 2.88E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 226 | 392 | 2.0E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 55 | 225 | 2.2E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 563 | 619 | 6.2E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 482 | 562 | 2.1E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 393 | 475 | 1.0E-6 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 348 | 373 | 44.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 322 | 347 | 83.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 587 | 612 | 37.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 216 | 241 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 509 | 534 | 10.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 429 | 454 | 2.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 135 | 163 | 320.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 455 | 480 | 6.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 482 | 507 | 0.0072 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 242 | 267 | 0.15 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 374 | 399 | 23.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 190 | 215 | 2.5E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 164 | 189 | 0.034 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 535 | 559 | 58.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 561 | 586 | 15.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_015078449.1 | EIN3-binding F-box protein 1-like [Solanum pennellii] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology