Basic Information
Locus ID:
gene-LOC107022173
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2825091 | 2831758 | + | gene-LOC107022173 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 60,016.07 Da | 37.70 | 81.20 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 435 | 497 | 1.7638E-18 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 57 | 315 | 1.13813E-139 | - |
| Pfam | PF13499 | EF-hand domain pair | 364 | 422 | 1.1E-8 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 58 | 316 | 7.1E-77 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 434 | 497 | 2.9E-15 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 55 | 325 | 1.89E-87 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 345 | 522 | 2.03E-45 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 325 | 499 | 2.5E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 47 | 139 | 4.7E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 140 | 324 | 1.2E-59 | - |
| SMART | SM00054 | efh_1 | 363 | 391 | 0.0022 | IPR002048 |
| SMART | SM00054 | efh_1 | 471 | 499 | 1.8E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 58 | 316 | 1.5E-100 | IPR000719 |
| SMART | SM00054 | efh_1 | 435 | 463 | 4.8E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 399 | 427 | 1.0 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 58 | 316 | 49.855579 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 467 | 502 | 13.843916 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 395 | 430 | 8.850639 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 359 | 394 | 13.09074 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 431 | 466 | 13.760229 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 178 | 190 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 480 | 492 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 64 | 87 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 444 | 456 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 408 | 420 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 32 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_015078365.1 | calcium-dependent protein kinase 8-like [Solanum pennellii] | 0 |
| Q42438 | Calcium-dependent protein kinase 8 OS=Arabidopsis thaliana OX=3702 GN=CPK8 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology