Basic Information
Locus ID:
gene-LOC107021618
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Exonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 59404407 | 59409174 | + | gene-LOC107021618 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 27,032.59 Da | 38.11 | 86.37 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06135 | Orn | 58 | 230 | 3.83879E-101 | IPR022894 |
| Pfam | PF00929 | Exonuclease | 59 | 221 | 3.0E-29 | IPR013520 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 56 | 231 | 1.17E-39 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 53 | 234 | 2.0E-71 | IPR036397 |
| SMART | SM00479 | exoiiiendus | 57 | 231 | 9.0E-25 | IPR013520 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26970.2 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_015077795.1 | oligoribonuclease-like [Solanum pennellii] | 0 |
| Q9ZVE0 | Oligoribonuclease OS=Arabidopsis thaliana OX=3702 GN=At2g26970 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35690, jg582 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24904 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025996 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g141200 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12764, Sbi_jg53134 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8748 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018949 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34107, Sgl34335, Sgl39735 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001765, gene:ENSEOMG00000003310 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0015380, CQ.Regalona.r1.6BG0016220 |
| Apiaceae | Apium graveolens | 1 | Ag2G01225 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G009340 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701944, gene-LOC103719005 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2914.V1.1, AsparagusV1_01.2916.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G28359, Ftri12G04113 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G26970.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002092m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g08380.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g045590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0670 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0681 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12670 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0227s00021.v1.0, Dusal.3222s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g06670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2321 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.47 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00025406, Pov_00025413, Pov_00025514 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G13538, Lb6G30979, Lb6G30986 |
| Poaceae | Echinochloa crus-galli | 5 | AH09.470, BH07.1694, BH09.512, CH07.1526, CH09.562 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0130410, gene-QOZ80_2BG0185620 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0159190.3, HORVU.MOREX.r3.6HG0631340.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022655, gene-QYE76_043368 |
| Poaceae | Oryza coarctata | 3 | Oco03G009800, Oco04G010120, Oco08G002930 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g26660.1, LOC_Os04g23830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G015300 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0303146, Pt_Chr0303198, Pt_Chr0404811, Pt_Chr0405866 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr09G016520, Chr13G013310, Chr25G013660, Chr30G013450 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G491200, Tel6E01G735200, Tel6E01G739000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG039170, gene_TRIDC2BG042170 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G272100.1, TraesCS2B02G290300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb240820_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19053, nbis-gene-53023 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16303, Zma_g19438 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.89, evm.TU.LG13.607, evm.TU.LG21.300 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26900 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.451, evm.TU.Scaffold_13_RagTag.621 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24298, nbisL1-mrna-30447 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14502 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19712 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000015l.346, evm.TU.utg000015l.347 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015792, Maker00018113 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4267, nbisL1-mrna-5692 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15171 |
| Salicaceae | Populus euphratica | 2 | populus_peu02365, populus_peu02415 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631610 |
| Solanaceae | Solanum chilense | 2 | SOLCI005024200, SOLCI007263400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021618, gene-LOC107031283 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22947_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2690 |
| Zosteraceae | Zostera marina | 1 | Zosma01g39180.v3.1 |