Basic Information
Locus ID:
gene-LOC107021291
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Eukaryotic translation initiation factor eIF2A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 35753613 | 35756130 | - | gene-LOC107021291 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 54,343.65 Da | 49.48 | 72.24 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 215 | 474 | 2.7474E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 438 | 474 | 1.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 344 | 2.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 349 | 389 | 0.0044 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 175 | 475 | 4.58E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 136 | 476 | 7.7E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 435 | 474 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 392 | 432 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 218 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 220 | 261 | 0.52 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 301 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 389 | 1.5E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 442 | 475 | 11.761044 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 442 | 475 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 344 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 13.582925 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 461 | 475 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 65 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_015077405.1 | protein FIZZY-RELATED 3 [Solanum pennellii] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology