Basic Information
Locus ID:
gene-LOC107021207
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 54708930 | 54715738 | + | gene-LOC107021207 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 56,650.73 Da | 51.81 | 68.30 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 212 | 241 | 0.084 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 25 | 487 | 3.3E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 245 | 1.3E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 246 | 491 | 3.8E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 203 | 241 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 292 | 99.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 458 | 493 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 135 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 15 | 53 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 353 | 407 | 34.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 2 | 494 | 4.4E-163 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 463 | 492 | 1.6E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 380 | 406 | 1.6E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 298 | 325 | 1.6E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 269 | 297 | 1.6E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 354 | 379 | 1.6E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 213 | 240 | 1.6E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 241 | 268 | 1.6E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 32 | 52 | 1.6E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 111 | 139 | 1.6E-113 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 326 | 353 | 1.6E-113 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 443 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 443 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.2 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_015077302.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 [Solanum pennellii] | 0 |
| Q39247 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology